"RNA Folding: A Physicist's Perspective"
Dr. Henri Orland
Director, Institut de Physique Theorique,
CEA-Saclay
Fellow of the Mortimer and Raymond Sackler Institute of
Advanced Studies
After reviewing some elementary properties of RNA, we discuss how
statistical mechanics can be used to determine the secondary structure
of RNA. The idea is to first parametrize (as well as possible) the
free energy of secondary structures. Given such a parametrization, we
review the algorithms used for the prediction of secondary structures
without pseudoknots. To include pseudoknots, we propose a
classification of RNA structures in terms of their topological
genii. This classification is based on matrix field-theories. We
modify the free energy parametrization so as to include a penalty
proportional to the genus of the RNA structure, and we show how with
this new parametrization, one can efficiently predict RNA structures
with pseudoknots.
Host:
Prof. David Andelman, x7239
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