Homepage of Yaron Orenstein

Yaron Orenstein

I am a PhD student at the School of Computer Science at Tel Aviv University.
My advisor is Prof. Ron Shamir, and I am a member of the Algorithms in Computational Genomics
research group.

Curriculum Vitae.pdf

Contact

Email:


	
	yaronore[at]tau[dot]ac[dot]il

Phone: 972-3-640-5394

Address:

School of Computer Science

Schreiber, Room no. 011

Tel Aviv University

Tel Aviv 69978, Israel

Research Interests

Motif finding, Motif discovery, Protein binding microarrays, Design of probe sequences, de Bruijn sequences

Publications

Y. Orenstein and D. Ron

Testing Eulerianity and Connectivity in Directed Sparse Graphs

Y. Orenstein, C. Linhart and R. Shamir

Assessment of algorithms for inferring positional weight matrix motifs of transcription factor binding sites using protein binding microarray data

Matthew T Weirauch, Atina Cote, Raquel Norel, Matti Annala, Yue Zhao, Todd R Riley, Julio Saez-Rodriguez, Thomas Cokelaer,
Anastasia Vedenko, Shaheynoor Talukder, DREAM5 Consortium (including Y. Orenstein, C. Linhart, R. Shamir), Harmen J Bussemaker,
Quaid D Morris, Martha L Bulyk, Gustavo Stolovitzky and Timothy R Hughes

Evaluation of methods for modeling transcription factor sequence specificity

Y. Orenstein, E. Mick and R. Shamir

RAP: Accurate and fast motif finding based on protein binding microarray data

Y. Orenstein and R. Shamir
Design of Shortest Double-Stranded DNA Sequences Covering All K-mers with Applications to Protein Binding Microarrays and Synthetic Enhancers
Accepted to Bioinformatics.

Teaching