Published
Molecular Biology and Evolution (2021): A probabilistic model for indel evolution: differentiating insertions from deletions
Journal of Molecular Biology (2021): Motifier: an IgOme profiler based on peptide-motifs using machine learning
Proceedings of the National Academy of Sciences (2021): A phage mechanism for selective nicking of dUMP-containing DNA
Frontiers in Immunology (2021): Domain-Scan: combinatorial sero-diagnosis of infectious diseases using machine learning
mSystems (2021): Harnessing machine learning to unravel protein degradation in Escherichia coli
PLoS Computational Biology (2021): PASA: proteomic analysis of serum antibodies web server
EMBO Molecular Medicine (2020): COVID-19 pandemic-related lockdown: response time is more important than its strictness
Molecular Biology and Evolution (2020): ModelTeller: model selection for optimal phylogenetic reconstruction using machine learning
Nucleic Acids Research (2019): M1CR0B1AL1Z3R - a user-friendly web server for the analysis of large-scale microbial genomics data
Frontiers in Immunology (2018): ASAP - A web server for Immunoglobulin-Sequencing analysis pipeline
PLoS Genetics (2016): Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations
Genome Biology and Evolution (2015): Inferring indel parameters using a simulation-based approach
Submitted
Effectidor: an automated machine-learning based web server for the prediction of type-III secretion system effectors
An approximate Bayesian computation approach for modeling genome rearrangements